Open-Desk Sessions

Do you have questions about image analysis? Do you need help with a script or macro? Are you planning to start an image analysis project with us? Then come join us at the next open-desk session. The access is free and no inscription is needed, but we ask you to kindly give us some information, that will help us planning the sessions.

The upcoming sessions are (please click on a date to go to the inscription):

You need a QR-code and ID to enter the campus. You can demand the creation of a QR-code here. You need to select CRBM-MRI as the  laboratory you want to visit and "Volker Baecker" as approver. Should you not have access, please ask for the qr-code via email at This email address is being protected from spambots. You need JavaScript enabled to view it..

The IGMM is the building next to the CRBM.

Posted in English

About MRI-CIA

The MRI Center for Image Analysis (MRI-CIA)

MRI-CIA has been created to answer the bioimage analysis needs of the users of MRI. We offer comprehensive support for bioimage analysis, from the start of a research project to publication. The support we provide is tailored to each individual case and can include one-on-one software training or the creation of custom analysis tools. We handle various aspects of image analysis, such as for example (list non-comprehensive):

  • image data handling
  • image restoration and registration
  • quantitative image analysis and visualization
  • instance segmentation and tracking
  • morphological and intensity quantification
  • colocalization analysis and spatial statistics

MRI-CIA closely collaborates with the other engineers of the MRI core facility in order to ensure optimal image acquisition modalities for downstream quantitative analysis.

Contact: This email address is being protected from spambots. You need JavaScript enabled to view it.

Please find more information here: The MRI image analysis service.pdf

STAFF

volker2
Head of MRI-CIA
clement
Bio-image analyst
thibault
Trainee M2

Posted in English

MRI Center For Image Analysis

Image and data analysis are an important part of imaging based research projects. MRI provides consulting, training and the hard- and software infrastructure needed for the analysis of imaging data. We also develop customized image analysis plugins for you.

Contact: This email address is being protected from spambots. You need JavaScript enabled to view it.

file info line2ABOUT MRI-CIA

We offer comprehensive support for bioimage analysis, from the start of a research project to publication. The support we provide is tailored to each individual case and can include one-on-one software training or the creation of custom analysis tools.

OPEN-DESK SESSION

Do you have questions about image analysis? Do you need help with a script or macro? Are you planning to start an image analysis project with us? Then come join us at the next open-desk session.

SOFTWARE AND TOOLS
The facility provides access to proprietary analysis software, open source software and tools developed in house. We also provide access to deep-learning solutions including the training on your own data on our machines.

proprietary     open-source     deep-learning     tools 

SCIENTIFIC WORKSTATIONS
Our scientific workstations provide the hardware needed to run visualization and analysis software, including deep-learning solutions. You can make a reservation for a workstation here.

 crbm      dbs     igh    inm    isem    Lagaillarde     Lavalette 

 TRAINING AND CONSULTING

Please contact the facility for training and consulting. The facility also provides freely accessible "Call for help" sessions. We regularly develop and animate image analysis related workshops within the context of the technological workshops of BioCampus Montpellier.

SUCCESS STORIES

Examples of successful MRI analysis projects.

 DATA-MANAGEMENT

 Data can be transferred between the sites of the facility via sFTP. For the scientific exploitation of the data the facility hosts a server OMERO.

 LINKS AND TUTORIALS

Useful links to tutorials and other image analysis resources.
   

Posted in English

Fees

How to pay for your consumption hours?

An administrative contact identified for each credit group will receive a consumption statement at regular intervals. He/she then has 15 days to send his/her purchase order to This email address is being protected from spambots. You need JavaScript enabled to view it.. Our rates are described in the document :

Notre autorisation de facturation

If you would like to see the actual hourly cost of a specific equipment, it is available on the description page of each of our systems. If you have any questions, you can contact us at This email address is being protected from spambots. You need JavaScript enabled to view it..

Posted in English