Napari-Bigfish is a plugin for the multi-dimensional image viewer napari. It provides an alternative graphical user interface to parts of the Big-FISH python package. Big-FISH is a python package for the analysis of smFISH images.

The parts currently available via the plugin are

MRI users can find napari with napari-bigfish installed on the analysis pcs of the core imaging facility.

Tags: image analysis, smFISH, FISH, RNA FISH, spot detection